PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00326.1_g00019.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family ERF
Protein Properties Length: 206aa    MW: 22726.3 Da    PI: 6.8051
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00326.1_g00019.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.44.8e-20134184255
                      AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                              +y+GVr+++ +g+++AeIrdp +ng  +r++lg+f tae+Aa a+++a+ +++g
  Rsa1.0_00326.1_g00019.1 134 HYRGVRQRP-WGKFAAEIRDPAKNG--ARVWLGTFETAEDAALAYDKAAFRMRG 184
                              8********.***********9987..*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000187.73E-32133192No hitNo description
Gene3DG3DSA:3.30.730.105.8E-33133193IPR001471AP2/ERF domain
PROSITE profilePS5103224.302134192IPR001471AP2/ERF domain
PfamPF008476.0E-14134184IPR001471AP2/ERF domain
SuperFamilySSF541713.01E-23134193IPR016177DNA-binding domain
SMARTSM003803.1E-40134198IPR001471AP2/ERF domain
PRINTSPR003673.5E-11135146IPR001471AP2/ERF domain
PRINTSPR003673.5E-11158174IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 206 aa     Download sequence    Send to blast
MAIESDYAFL ESIRRQLLEE SELRLSESTV AISGTGTTVH SVKPVYGRNS SFSKLYPCFS  60
DSWGDLPLKE NDSEDMLVYG ILNDAFHGGW EPSSSSSDED RSSLTTVKTE NFSAVDSVPA  120
KKTSPVQAPA KGKHYRGVRQ RPWGKFAAEI RDPAKNGARV WLGTFETAED AALAYDKAAF  180
RMRGSRALLN FPSRVNSGEP DPVRIK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3gcc_A6e-44130199170ATERF1
2gcc_A6e-44130199170ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013724110.11e-129PREDICTED: ethylene-responsive transcription factor 1A-like
SwissprotO803371e-110EF100_ARATH; Ethylene-responsive transcription factor 1A
TrEMBLA0A0D3A3T71e-128A0A0D3A3T7_BRAOL; Uncharacterized protein
TrEMBLM4FGD11e-128M4FGD1_BRARP; Uncharacterized protein
STRINGBra040159.1-P1e-127(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17500.14e-88ethylene responsive element binding factor 1